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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12260446_12260575_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12260446 - 12260575
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGAAC
5'SS Class:
major
3'SS Sequence:
ATTTAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTCATTTAACT
Flanking Amino Acid:
DIAWMKFDEQGHLRAINPEN
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
67.6
37.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.5
0.66
0.9
75.2
39
Minor 5ss
38.7
-1.3
3.1
51.2
45.6
Minor BPS
69.3
0.69
1.5
83.56
36.7

Associated Gene:

Gene:
PCK1
Ensembl Gene ID:
ENSAPLG00000002914
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002967
12257438 - 12264908
7471