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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12260739_12261697_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12260739 - 12261697
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGCCTTTTAACA
Flanking Amino Acid:
EEGWLAEHMLILGITNPEGE
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
74.3
34.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.9
0.52
0.9
69.9
35.4
Minor 5ss
33.2
-1.9
3.4
45.7
43.4
Minor BPS
61.5
0.36
1.2
63.32
36.9

Associated Gene:

Gene:
PCK1
Ensembl Gene ID:
ENSAPLG00000002914
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002967
12257438 - 12264908
7471