Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12263224_12264632_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12263224 - 12264632

Intron Length:

1409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

CATTGAAATGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

ATTTCCTGACTT

Flanking Amino Acid:

MIKKLSKYENCWLALTDPRD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

36.6

Major BPS

85.7

0.89

0.8

22.2

Major PPT

64.1

0.32

1.1

56.3

42.4

Minor 5ss

30.8

-2.2

2.6

33.6

35.6

Minor BPS

64.9

0.55

1.7

83.33

37.8

Associated Gene:

Gene:

PCK1

Ensembl Gene ID:

ENSAPLG00000002914

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002967

12257438 - 12264908

7471