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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12277970_12279659_F

Intron Information:

Intron Rank:
142640
Intron Class:
major
Intron Phase:
Intron Coordinates:
12277970 - 12279659
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATGATCTAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
85.2
0.79
0.8
80.1
32
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
49.1
-0.2
1.7
53.58
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026878
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042485
12277786 - 12281503
3718