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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1228722_1232518_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1228722 - 1232518
Intron Length:
3797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TATGTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
GAGCCTTCAAAC
Flanking Amino Acid:
VRGPNVEAGSLNPHIVLNID
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.2
33.4
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
85.3
0.79
0.8
77.2
41.6
Minor 5ss
45.4
-0.5
2.8
65.7
39.3
Minor BPS
47.3
-0.2
1.6
51.78
38.6

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040305
1196878 - 1261997
65120
ENSAPLT00000028490
1150893 - 1261834
110942
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942