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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1233638_1234347_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1233638 - 1234347
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
GTTTTTTCCACT
Flanking Amino Acid:
VWRDSFLVERGKLLHKRENE
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
74.1
38.3
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
83.5
0.75
0.8
75.1
34.5
Minor 5ss
38.3
-1.3
2.8
40.3
45.6
Minor BPS
52.2
0.15
2
76.21
40.7

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028490
1150893 - 1261834
110942
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942
ENSAPLT00000040305
1196878 - 1261997
65120