About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12376795_12377060_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12376795 - 12377060
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
MTGSWDKTLKFWDTRSPTPM
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
79.4
29.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.3
0.66
0.9
79.3
33.8
Minor 5ss
44.5
-0.6
3.1
64.3
47.2
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
RAE1
Ensembl Gene ID:
ENSAPLG00000003160
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003249
12376053 - 12385345
9293