About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12377148_12378064_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12377148 - 12378064
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
NSNQAIQIAQHDAPVKTIHW
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
72.6
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93
0.97
0.6
91.8
19.1
Minor 5ss
37.2
-1.4
2.9
46.5
35.3
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
RAE1
Ensembl Gene ID:
ENSAPLG00000003160
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003249
12376053 - 12385345
9293