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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12378152_12378976_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12378152 - 12378976
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTCCC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATC
Flanking Amino Acid:
GPVLDGCWSDDGSKVFTASC
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
64.4
39.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
44
-0.7
2.7
58.8
38.7
Minor BPS
65.3
0.46
1.4
70.61
34.3

Associated Gene:

Gene:
RAE1
Ensembl Gene ID:
ENSAPLG00000003160
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003249
12376053 - 12385345
9293