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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12380021_12380150_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12380021 - 12380150
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGCG
5'SS Class:
major
3'SS Sequence:
CCGGCCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CCGGCCTTTACA
Flanking Amino Acid:
TTADNHNPMKDIEVTSPPDD
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
63.6
41.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
71.8
0.49
0.9
63.9
36.8
Minor 5ss
29.7
-2.3
3.4
39.3
46.1
Minor BPS
52.7
0.08
1.8
58.52
47.1

Associated Gene:

Gene:
RAE1
Ensembl Gene ID:
ENSAPLG00000003160
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003249
12376053 - 12385345
9293