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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12384303_12384959_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12384303 - 12384959
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCATGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACGCAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
IASQPMWKKELEIMAASKMK
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
80.1
34.5
Major BPS
49.9
-0
1.3
61
37.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
31.8
-2.1
3.7
43
44
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100