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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12385072_12385271_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12385072 - 12385271
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CATTATTTACTT
Flanking Amino Acid:
WLGLLPSDLKRLNICKDVLI
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
85
0.79
0.8
81.8
34.9
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
52
0.14
1.8
69.44
42.1

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100