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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12385349_12386954_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12385349 - 12386954
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTGTAGTTGACT
Flanking Amino Acid:
IMCIYKYGSVSMSFEAHHLT
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.8
0.81
0.8
83.9
31.1
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
55
0.24
2.3
80.05
42.1

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100