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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12390479_12391795_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12390479 - 12391795
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTAATATAATT
Flanking Amino Acid:
TKVNCTCGATAVTVPSNVQG
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.4
0.73
0.9
81.2
36.5
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
50.8
0.1
1.8
73.24
37.4

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100