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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12391883_12392452_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12391883 - 12392452
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTACAATTTACT
Flanking Amino Acid:
LKIPRRSLHILSTTKGFVAG
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66
38.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
34.9
-1.7
3.2
45.2
38.1
Minor BPS
48.3
-0
2.1
73.36
42.3

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100