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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12392852_12393467_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12392852 - 12393467
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTTTTGAAGT
Flanking Amino Acid:
SDCPRSATKFALMLKILSMI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.9
0.83
0.8
84.7
35.8
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
54.3
0.21
1.7
71.84
39.1

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100