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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12393557_12396222_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12393557 - 12396222
Intron Length:
2666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TGCAATGTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTGCTGTATTT
Flanking Amino Acid:
VTRRSDWRNIEFKDSVGLQM
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
61.7
0.26
1.1
58.6
45.8
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
48.3
-0
2.3
74.81
43.2

Associated Gene:

Gene:
SPO11
Ensembl Gene ID:
ENSAPLG00000003492
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003562
12383798 - 12398897
15100