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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12425915_12449868_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12425915 - 12449868
Intron Length:
23954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTAAT
U12 Branch Point Sequence:
AGGTGGCTAATG
Flanking Amino Acid:
ADMVMSFVNLVEHDREFHHQ
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
61.6
0.29
1.3
63.6
42.5
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
38.1
-1
2.5
42.79
42.8

Associated Gene:

Gene:
BMP7
Ensembl Gene ID:
ENSAPLG00000003504
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003590
12425398 - 12469208
43811