About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1244561_1250683_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1244561 - 1250683
Intron Length:
6123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CTTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AATCCTTTTACT
Flanking Amino Acid:
GRRKKLFSKKKYKPSYVRNR
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.4
0.77
0.8
80.4
31.5
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
62.7
0.48
1.6
77.1
39.1

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028490
1150893 - 1261834
110942
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942
ENSAPLT00000040305
1196878 - 1261997
65120