About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12450062_12460626_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12450062 - 12460626
Intron Length:
10565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGAAAT
U12 Branch Point Sequence:
GTAACAAGAAAT
Flanking Amino Acid:
VYQVLQEHPGRDSDLFLLDS
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
50.6
0.02
1.1
57
36.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
41.8
-0.5
2
60.05
41.6

Associated Gene:

Gene:
BMP7
Ensembl Gene ID:
ENSAPLG00000003504
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003590
12425398 - 12469208
43811