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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12467190_12467691_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12467190 - 12467691
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCAATTAATCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATGTCTTCAATT
Flanking Amino Acid:
YVSFRDLGWQDWIIAPEGYA
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
56.6
0.15
1.2
54.1
43.9
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
65.9
0.58
1.5
78.35
38.5

Associated Gene:

Gene:
BMP7
Ensembl Gene ID:
ENSAPLG00000003504
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003590
12425398 - 12469208
43811