About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12467803_12469058_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12467803 - 12469058
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TTTAATTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTGCTTTAATT
Flanking Amino Acid:
ATNHAIVQTLVHFINPETVP
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.1
0.63
0.9
69.9
41
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
73.8
0.82
1.3
82.98
39.3

Associated Gene:

Gene:
BMP7
Ensembl Gene ID:
ENSAPLG00000003504
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003590
12425398 - 12469208
43811