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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1250928_1252673_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1250928 - 1252673
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTACTATAATA
Flanking Amino Acid:
TAPNLIKVTHRCYILENDTV
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
71
0.47
1.1
66
44.4
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
58.3
0.26
1.6
68.67
38.1

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040305
1196878 - 1261997
65120
ENSAPLT00000028490
1150893 - 1261834
110942
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942