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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12511141_12513079_R

Intron Information:

Intron Rank:
150959
Intron Class:
major
Intron Phase:
Intron Coordinates:
12511141 - 12513079
Intron Length:
1939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTGACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
TTTCCCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.5
41.3
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
66.5
0.37
0.9
65.6
35
Minor 5ss
29.8
-2.3
2.6
30.3
36.7
Minor BPS
61.8
0.45
1.8
82.5
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028721
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040140
12511074 - 12528106
17033