About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12513210_12563526_R

Intron Information:

Intron Rank:
150958
Intron Class:
major
Intron Phase:
Intron Coordinates:
12513210 - 12563526
Intron Length:
50317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTGTCCCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.1
0.56
0.9
67.9
38.9
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
44.7
-0.4
2.1
63.62
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028721
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035226
12512782 - 12564033
51252