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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1252771_1253878_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1252771 - 1253878
Intron Length:
1108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
KDHKLHIDHEIETLQNKIKN
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.3
26.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
92.3
0.95
0.6
91.5
19.8
Minor 5ss
30.6
-2.2
3.3
40.3
40.1
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942
ENSAPLT00000040305
1196878 - 1261997
65120
ENSAPLT00000028490
1150893 - 1261834
110942