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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1257190_1257707_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1257190 - 1257707
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGAATA
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTATCTTAAGT
Flanking Amino Acid:
QHWQTAPLWTLGPFCACTSA
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.3
80.8
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
92.5
0.96
0.6
88.1
21.6
Minor 5ss
38.4
-1.3
3
48.8
40.5
Minor BPS
66.3
0.59
1.7
81.12
40.4

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028490
1150893 - 1261834
110942
ENSAPLT00000010385
1159516 - 1261738
102223
ENSAPLT00000041258
1150893 - 1261834
110942
ENSAPLT00000040305
1196878 - 1261997
65120