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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1259710_1261186_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1259710 - 1261186
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
GLKDGSYEQYRGQLWEGWEG
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
71.6
0.54
1
72
33.1
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
SULF2
Ensembl Gene ID:
ENSAPLG00000009910
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041258
1150893 - 1261834
110942