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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12624652_12649891_R

Intron Information:

Intron Rank:
152820
Intron Class:
major
Intron Phase:
Intron Coordinates:
12624652 - 12649891
Intron Length:
25240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGAG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTCTCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.3
40
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
89.1
0.88
0.6
84.4
23.4
Minor 5ss
27.7
-2.6
3.6
37
47.6
Minor BPS
51.8
0.14
1.8
73.23
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029784
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031687
12604624 - 12650481
45858