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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12725143_12725339_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12725143 - 12725339
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
GTGTGTGCAACT
Flanking Amino Acid:
DMAHQMEEVQNVEDQHLLMH
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
42.4
-0.8
3.1
59.1
45.6
Minor BPS
42.9
-0.4
2.4
64.33
46.2

Associated Gene:

Gene:
TFAP2C
Ensembl Gene ID:
ENSAPLG00000017261
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042241
12718678 - 12726974
8297