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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12725817_12726926_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12725817 - 12726926
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCCC
U12 Branch Point Sequence:
CCTCCCTTCTCC
Flanking Amino Acid:
DNVKYEEDCEDRHDGSSNGN
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
75.9
0.58
0.9
65.6
41
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
40.2
-0.7
3.6
59.18
45.9

Associated Gene:

Gene:
TFAP2C
Ensembl Gene ID:
ENSAPLG00000017261
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042241
12718678 - 12726974
8297