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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12753657_12756310_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12753657 - 12756310
Intron Length:
2654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGAT
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
GTATGTTTGACT
Flanking Amino Acid:
KRQIIFTKSSGDNGSSSAPG
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
37.5
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
83.5
0.75
0.7
77
31.8
Minor 5ss
29.3
-2.4
3.3
40.4
45.9
Minor BPS
60
0.4
1.8
76.38
40.4

Associated Gene:

Gene:
RTF2
Ensembl Gene ID:
ENSAPLG00000022166
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034320
12752450 - 12777014
24565