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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12759017_12774521_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12759017 - 12774521
Intron Length:
15505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
KEIKTEVCHKCGVPFQEEDV
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
69.6
0.49
1
59.5
39
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
RTF2
Ensembl Gene ID:
ENSAPLG00000022166
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034320
12752450 - 12777014
24565