About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12775524_12775737_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12775524 - 12775737
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
EAASHIKSIKNVTELNLADN
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.1
0.79
0.8
82
34.8
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
RTF2
Ensembl Gene ID:
ENSAPLG00000022166
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034320
12752450 - 12777014
24565