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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12775832_12775932_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12775832 - 12775932
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATTGTTGAAAA
Flanking Amino Acid:
CRPIVACELGRLYNKDAVIE
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.7
40.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.7
0.71
0.9
76.7
37.2
Minor 5ss
36.8
-1.5
3.5
56.6
47.5
Minor BPS
47.6
-0.1
1.9
59.68
39.6

Associated Gene:

Gene:
RTF2
Ensembl Gene ID:
ENSAPLG00000022166
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034320
12752450 - 12777014
24565