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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12776028_12776765_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12776028 - 12776765
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGGGCG
5'SS Class:
major
3'SS Sequence:
TGTTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GCTACTTTAAAA
Flanking Amino Acid:
LVKGPPKAQKVDKTAELVAR
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
54.5
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.9
82
34.8
Minor 5ss
31
-2.2
3.3
39
46.4
Minor BPS
61.8
0.37
1.5
66.12
40

Associated Gene:

Gene:
RTF2
Ensembl Gene ID:
ENSAPLG00000022166
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034320
12752450 - 12777014
24565