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Intron Name: Anas_platyrhynchos_platyrhynchos_21_12781715_12783513_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12781715 - 12783513

Intron Length:

1799

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TGCTCTGTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAA

U12 Branch Point Sequence:

TGCTTATAAATC

Flanking Amino Acid:

VNHRDSPVGNLYDVPPKRET

Intron Amino Acid Position:

234

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

34.8

Major BPS

78.6

0.71

78.6

Major PPT

78.3

0.64

0.9

72.4

37.7

Minor 5ss

37.5

-1.4

2.8

41.7

Minor BPS

48.2

-0.1

1.9

59.33

40.3

Associated Gene:

Gene:

CASS4

Ensembl Gene ID:

ENSAPLG00000004370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004484

12778402 - 12788311

9910

ENSAPLT00000039018

12777099 - 12797145

20047

ENSAPLT00000032690

12777099 - 12800493

23395