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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12788194_12800448_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12788194 - 12800448
Intron Length:
12255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAC
U12 Branch Point Sequence:
CGTAACATAACA
Flanking Amino Acid:
KNISSNRTAKNTLAKALYDN
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
56.5
0.16
1.1
58
34.4
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
49.6
-0
1.9
63.36
42.1

Associated Gene:

Gene:
CASS4
Ensembl Gene ID:
ENSAPLG00000004370
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032690
12777099 - 12800493
23395