Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12811352_12812600_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12811352 - 12812600

Intron Length:

1249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

TTTTATATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TCTATCATAAAT

Flanking Amino Acid:

PLRLPFLEADAPPRHSLLTM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.3

68.8

43.8

Major BPS

79.2

0.73

75.3

39.4

Major PPT

88.1

0.86

0.8

32.8

Minor 5ss

31.1

-2.2

2.6

32.7

34.9

Minor BPS

55.1

0.24

1.8

74.71

41.6

Associated Gene:

Gene:

CSTF1

Ensembl Gene ID:

ENSAPLG00000004391

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004534

12805811 - 12812720

6910