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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1281617_1282770_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1281617 - 1282770
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
TTCCATGTAACA
Flanking Amino Acid:
QPRAMMEEGEGKLVNIDTNS
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
70.1
0.45
1
65.1
39.8
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
48.3
-0.1
2.1
65.36
41.2

Associated Gene:

Gene:
NCOA3
Ensembl Gene ID:
ENSAPLG00000009790
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010262
1266482 - 1291670
25189