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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12817146_12817458_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12817146 - 12817458
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAATCTTTAAAT
Flanking Amino Acid:
RREVEIQSHLRHPNILRLYG
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.4
0.68
0.9
74
35.7
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
69.9
0.7
1.3
78.17
37.3

Associated Gene:

Gene:
AURKA
Ensembl Gene ID:
ENSAPLG00000004677
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029911
12817006 - 12821682
4677
ENSAPLT00000025472
12814750 - 12819738
4989
ENSAPLT00000004826
12814750 - 12820545
5796