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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12818125_12818779_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12818125 - 12818779
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TAAACTGTAACT
Flanking Amino Acid:
FGWSVHAPSSRRTTLCGTLD
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
68
0.45
1
57.8
39
Major PPT
90.1
0.9
0.7
88.4
27.9
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
55.2
0.24
2
74.83
41.6

Associated Gene:

Gene:
AURKA
Ensembl Gene ID:
ENSAPLG00000004677
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029911
12817006 - 12821682
4677
ENSAPLT00000025472
12814750 - 12819738
4989
ENSAPLT00000004826
12814750 - 12820545
5796