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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12818955_12820527_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12818955 - 12820527
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTACC
5'SS Class:
major
3'SS Sequence:
TTTGAAAAGATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAATTTTGAAAA
Flanking Amino Acid:
YQETYRAISRRFKRN*
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.5
38.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
53.7
0.08
1.1
48.8
43
Minor 5ss
42.6
-0.8
2.4
47.1
41.5
Minor BPS
48.9
-0
1.5
55.1
37.3

Associated Gene:

Gene:
AURKA
Ensembl Gene ID:
ENSAPLG00000004677
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004826
12814750 - 12820545
5796