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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12824912_12826615_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12824912 - 12826615
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTACTTAATG
Flanking Amino Acid:
LRAAAGSSAKDVGGSPNKAA
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
64.1
41.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.6
0.76
0.7
82.1
30
Minor 5ss
35.3
-1.7
3.6
49.7
46.9
Minor BPS
70.4
0.5
1.6
72.29
40.8

Associated Gene:

Gene:
FAM210B
Ensembl Gene ID:
ENSAPLG00000021271
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024923
12823709 - 12828118
4410