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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_1282518_1282770_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1282518 - 1282770
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
QPRAMMEEGEDLQSCMICVA
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.9
75
38
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
NCOA3
Ensembl Gene ID:
ENSAPLG00000009790
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029889
1265850 - 1291670
25821