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Intron Name: Anas_platyrhynchos_platyrhynchos_21_1286781_1291594_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1286781 - 1291594

Intron Length:

4814

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

GTATTGCTTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TCATTCACAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

80.5

27.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

73.5

0.53

0.9

70.3

Minor 5ss

42.9

-0.8

2.8

57.1

40.8

Minor BPS

49.9

0.07

1.8

69.59

41.5

Associated Gene:

Gene:

NCOA3

Ensembl Gene ID:

ENSAPLG00000009790

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029889

1265850 - 1291670

25821

ENSAPLT00000010262

1266482 - 1291670

25189