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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12891589_12893036_F

Intron Information:

Intron Rank:
25251
Intron Class:
major
Intron Phase:
Intron Coordinates:
12891589 - 12893036
Intron Length:
1448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TATTGCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
85.6
0.8
0.7
84.8
29.7
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
49.5
0.04
2.1
74.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004809
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048390
12879097 - 12896492
17396