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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12899246_12899854_F

Intron Information:

Intron Rank:
25246
Intron Class:
major
Intron Phase:
Intron Coordinates:
12899246 - 12899854
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
CATTCTTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
78.7
0.65
0.9
74.9
38.5
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
63.3
0.5
1.7
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004809
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004947
12893037 - 12900676
7640