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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12900279_12900466_F

Intron Information:

Intron Rank:
25247
Intron Class:
major
Intron Phase:
Intron Coordinates:
12900279 - 12900466
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCATTCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
79
0.65
0.9
77.1
36.8
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
54.4
0.22
1.9
71.82
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004809
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004947
12893037 - 12900676
7640
ENSAPLT00000033343
12899835 - 12905314
5480