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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_12908190_12908730_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12908190 - 12908730
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATG
Flanking Amino Acid:
LHVVDQFMLEMCKIPHLGQR
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.4
0.64
0.9
73.5
36.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.2
-0.1
2.2
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028977
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023372
12908099 - 12916585
8487